Evaluation and discrimination of simvastatin-induced structural alterations in proteins of different rat tissues by FTIR spectroscopy and neural network analysis

Statins are commonly used to control hypercholesterolemia and to prevent cardiovascular diseases. Among the statins, Simvastatin is one of the most frequently prescribed statins because of its efficacy in reducing LDL lipoprotein cholesterol levels, its tolerability, and its reduction of cardiovascular risk and mortality. Conflicting results have been reported with regard to benefits (pleiotropic effects) as well as risks (adverse effects) of simvastatin on different soft and hard tissues. In the current study, Attenuated Total Reflectance-Fourier transform infrared (ATR-FTIR) spectroscopy was used to obtain detailed information about protein conformational changes due to simvastatin therapy of soft tissues namely liver, testis, sciatic nerve and hard tissues such as femur and tibia. Protein secondary structural changes were predicted by intensity calculations from second derivative spectra and neural network (NN) analysis, using the amide I band (1700-1600 cm(-1)) of FTIR spectra. Moreover, based on protein secondary structural differences, hierarchical cluster analysis was carried out in the 1700-1600 cm(-1) region. The results of our study in liver, testis and sciatic nerve tissues revealed that simvastatin treatment significantly decreased alpha helix structure and beta sheet structure at 1638 cm(-1), while increased the anti-parallel and aggregated beta sheet and random coil structures implying a simvastatin-induced protein denaturation in treated groups. Different to soft tissues, the results of hard tissue studies on femur and tibia bones revealed increased alpha helix structure and decreased anti-parallel beta sheet, aggregated beta sheet and random coil structures implying more strengthened bone tissues in simvastatin-treated groups. Finally, the simvastatin-treated and control groups for all soft and bone tissues were successfully differentiated using cluster analysis. According to the heterogeneity values in the cluster analysis of these tissues, the sciatic nerve tissue was found to be the most affected tissue from simvastatin treatment among the studied soft tissues. In addition, the high heterogeneity value implied high secondary structural difference between control and simvastatin-treated groups in tibia bone tissues. These findings reveal that FTIR spectroscopy with bioinformatic analyses such as neural network and hierarchical clustering, allowed us to determine the simvastatin-induced protein conformational changes as adverse and pleiotropic effects of the drug on different soft and hard tissues.     

Signal ratio amplification via modulation of resonance energy transfer: proof of principle in an emission ratiometric Hg(II) sensor

Boradiazaindacene dyads designed as energy transfer casettes can be modified to signal cation concentrations ratiometrically. If the energy transfer efficiency is increased via changing spectral overlap on cation binding, an enhancement of emission signal ratios can be obtained. A larger range of ratios results in highly improved sensitivity to analyte concentrations. We demonstrate this approach in a de novo design of a novel and highly selective ratiometric chemosensor for Hg(II) ions.     

Dissection of aminoglycoside-enzyme interactions: a calorimetric and NMR study of neomycin B binding to the aminoglycoside phosphotransferase(3')-IIIa

In this work, for the first time, we report pKa values of the amino functions in a target-bound aminoglycoside antibiotic, which permitted dissection of the thermodynamic properties of an enzyme-aminoglycoside complex. Uniformly enriched 15N-neomycin was isolated from cultures of Streptomyces fradiae and used to study its binding to the aminoglycoside phosphotransferase(3')-IIIa (APH) by 15N NMR spectroscopy. 15N NMR studies showed that binding of neomycin to APH causes upshifts of approximately 1 pKa unit for the amines N2' and N2' ' while N6' experienced a 0.3 pKa unit shift. The pKa of N6' ' remained unaltered, and resonances of N1 and N3 showed significant broadening upon binding to the enzyme. The binding-linked protonation and pH dependence of the association constant (Kb) for the enzyme-aminoglycoside complex was determined by isothermal titration calorimetry. The enthalpy of binding became more favorable (negative) with increasing pH. At high pH, binding-linked protonation was attributable mostly to the amino functions of neomycin; however, at neutral pH, functional groups of the enzyme, possibly remote from the active site, also underwent protonation/deprotonation upon formation of the binary enzyme-neomycin complex. The Kb for the enzyme-neomycin complex showed a complicated dependence on pH, indicating that multiple interactions may affect the affinity of the ligand to the enzyme and altered conditions, such as pH, may favor one or another. This work highlights the importance of determining thermodynamic parameters of aminoglycoside-target interactions under different conditions before making attributions to specific sites and their effects on these global parameters.     

Active ruthenium‐(N‐heterocyclic carbene) complexes for hydrogenation of ketones

Four ruthenium‐N‐heterocyclic carbene complexes ( 3–6 ) have been prepared and the new compounds characterized by C, H, N analyses, ¹H‐NMR and ¹³C‐NMR. The reduction of ketones to alcohols via transfer hydrogenation was achieved with catalytic amounts of complexes 3–6 in the presence of t‐BuOK. Copyright © 2006 John Wiley & Sons, Ltd.     

Synthesis of novel palladium N‐heterocyclic‐carbene complexes as catalysts for Heck and Suzuki cross‐coupling reactions

Novel palladium‐1,3‐dialkylperhydrobenzimidazolin‐2‐ylidene (2a–c) and palladium‐1,3‐dialkylimidazolin‐2‐ylidene complexes (4a,b) have been prepared and characterized by C, H, N analysis, ¹H‐NMR and ¹³C‐NMR. Styrene or phenylboronic acid reacts with aryl halide derivatives in the presence of catalytic amounts of the new palladium‐carbene complexes, PdCl₂(1,3‐dialkylperhydrobenzimidazolin‐2‐ylidene) or PdCl₂(1,3‐dialkylimidazolin‐2‐ylidene) to give the corresponding C? C coupling products in good yields. Copyright © 2006 John Wiley & Sons, Ltd.     

Near‐IR‐Triggered,Remote‐Controlled Release of Metal Ions: A Novel Strategy for Caged Ions

A ligand incorporating a dithioethenyl moiety is cleaved into fragments which have a lower metal‐ion affinity upon irradiation with low‐energy red/near‐IR light. The cleavage is a result of singlet oxygen generation which occurs on excitation of the photosensitizer modules. The method has many tunable factors that could make it a satisfactory caging strategy for metal ions.     

Reactions of Electron-Rich Olefins with Proton-Active Compounds

Abstract: From the reaction of electron-rich olefins, bis(1,3-dimethylbenzimidazolidine-2-ylidene), I, or bis(3-methylbenzothiazolidine-2-ylidene), II with proton active compounds, such as dimethyl phosphite, diethyl phosphite, acetonitrile and benzaldehyde were obtained 2-substituted benzimidazole or benzothiazole derivatives. The compounds synthesized were identified by ¹H, ¹³ C, ³¹P-NMR, mass, FT-IR spectroscopic techniques and micro analysis.     

Preparation and characterisation of thiol functionalised p-tert-butylcalix[4]arene-embedded polymer inclusion membranes: performance and selectivity

ABSTRACT

Here in we report the syntheses of the thiol functionalised p-tert-butylcalix[4]arene from the reaction of p-tert-butylcalix[4]arene-dialkylbromide derivative with thiourea. The structure of the thiol functionalised p-tert-butylcalix[4]arene was determined by using ¹HNMR, ¹³CNMR and elemental analysis techniques. Furthermore, the thiol functionalised p-tert-butylcalix[4]arene, cellulose triacetate (CTA) and 2-nitrophenyl octyl ether (o-NPPE) in dichloromethane were used to make a new calixarene-embedded polymer inclusion membrane (Bu^t-C@PIM). The surface and structure morphology of Bu^t-C@PIM was detected using thermogravimetric analysis, elemental analysis techniques and scanning electron microscopy. The affinity (the percentage of metal ion transferred from the source solution) of a PIM towards a range of divalent cations was found to follow the order Pb²⁺ > Zn²⁺ > Ni²⁺ > Cu²⁺ > Cd²⁺ > Co²⁺. The results also indicated that the transport efficiency of Bu^t-C@PIM was repeatable and may be beneficial in the development of a simplistic and highly influential trace metal recovery method from aqueous solution.     

Development and validation of a viscoelastic finite element model of an L2/L3 motion segment

The prediction of the time dependent response of the spine to dynamic loading conditions is essential in understanding the injury mechanisms leading to occupationally related low back disorders (OLBD). Many previous finite element (FE) models of the lumbar spine have over-simplified the geometry and the material properties of their elements, yielding results limited generalizability. This study reports on the development and validation of a nonlinear viscoelastic FE model that can quantify the mechanical responses of the L2/L3 motion segment to time varying external loads. This model was developed by consideration of the intrinsic material properties of its individual constituents. A piecewise parameter identification method was adopted due to the inherent complexity in determining the role and contribution of each element to the overall behavior of the motion segment. The results of simulation of four loading conditions (quasistatic, constant loading rate, creep and cyclic relaxation) showed a satisfactory agreement with experimental observations in the literature. The detailed estimates of the state of stress/strain of this validated FE model can be used to test the role of epidemiological risk factors such as prolonged awkward posture, speed of lift (strain rate effect) and complex repetitive loading in OLBD.     

Tunable Two-Frequency Lasers for Lifetime Measurements

We built a compact two-tunable-frequency longitudinally pumped solid-state laser specially designed to measure atomic lifetimes. Weak coupling between the laser eigenstates permits the obtaining of a continuously tunable frequency difference between 0 and 10 GHz. Such a source provides either a linear polarization rotating at such frequencies, or a sinusoidally modulated intensity with a 100% modulation amplitude. As an example, the fluorescence lifetime of the first excited state of Cr⁴⁺ in YAG is measured in the zero-fluence limit using a two-frequency Nd:YAG laser at 1064 nm.